Data Science & Analytics

Tooluniverse Protein Structure Retrieval

Protein structure retrieval from RCSB PDB, PDBe, AlphaFold, SWISS-MODEL, 3D-Beacons (cross-provider structure aggregator), and PDB-REDO (re-refined X-ray structures), with disambiguation, quality assessment (resolution, R-factor, pLDDT, coverage), and metadata. Distinguishes high-quality experimental (X-ray under 2 Angstrom) vs predicted vs homology-model vs medium-quality structures. Use for fetching protein structures, structure-quality comparison, batch model-availability checks across a gene list, checking every structure provider at once, and selecting structures for drug design or modeling.

Publisher / source

mims-harvard/ToolUniverse (found on GitHub top repositories)

Upstream record

mims-harvard/ToolUniverse

Version

Version 1

Published

2026-11-10

Publication review

Approved for publication · recorded passed scan 2026-11-10

Content fingerprint

3a483f7a48f3e79af773fb440566090d4fbf4fc208d55c3a61a08b9081ba0c86