Data Science & Analytics
Scanpy
Standard single-cell RNA-seq analysis pipeline. For quality control (QC), normalization, dimensionality reduction (PCA/UMAP/t-SNE), clustering, differential expression analysis, and visualization. Best suited for exploratory single-cell transcriptomics analysis using established workflows. For deep learning models, use scvi-tools; for data format issues, use anndata.
- Publisher / source
- aipoch/medical-research-skills (found on GitHub top repositories)
- Upstream record
- aipoch/medical-research-skills
- Version
- Version 1
- Published
- Publication review
- Approved for publication
- Content fingerprint
b8ec2b4312ed6d4ded55b6c107bf81ebc57798ce6355cb7a27d0faf777d1f210