Data Science & Analytics

CELLxGENE Census

Query the CZ CELLxGENE Census programmatically for versioned public single-cell and spatial transcriptomics data. Use when you need population-scale cell metadata, gene expression slices, Census summary counts, source H5AD URIs/downloads, embeddings, spatial Census data, or reference atlas comparisons across organisms, tissues, diseases, assays, and cell types. For analyzing your own local single-cell data use scanpy, anndata, or scvi-tools.

Publisher / source

KalarisLabs/research-agent-skills (found on the CSV list)

Upstream record

KalarisLabs/research-agent-skills

Version

Version 2

Published

2026-11-02

Publication review

Approved for publication

Content fingerprint

2385e238de48aeeff466c959d39d684ab9e2277c76b2006c5565390afbe93cb0