Medical & Healthcare
Mining PubMed Literature
Searches and fetches PubMed and PMC via NCBI E-utilities (ESearch then EFetch/ESummary) to gather biomedical evidence and build text corpora. Use when the user wants citations for a condition or drug, abstracts to summarize, MeSH-based searches, or a corpus of literature to run NER over. Trigger keywords: PubMed, PMC, NCBI, E-utilities, ESearch, EFetch, ESummary, MeSH, PMID, literature search, abstracts, evidence. Pairs adjacent to OpenMed: fetched abstracts feed openmed.analyze_text for biomedical NER, and OpenMed-extracted diagnoses/drugs/genes become the search terms. E-utilities are public; an optional free API key raises rate limits from 3 to 10 requests/second.
- Publisher / source
- maziyarpanahi/openmed (found on GitHub top repositories)
- Upstream record
- maziyarpanahi/openmed
- Version
- Version 1
- Published
- Publication review
- Approved for publication · recorded passed scan 2026-11-05
- Content fingerprint
eb93a7245f2d49b077535aed5bf185afd7b7e45f3e25884593b6aaf6fd276af3