Medical & Healthcare

AlterLab CELLxGENE

Query the CZ CELLxGENE Census (200M+ cells) programmatically via cellxgene-census and TileDB-SOMA, slicing expression by tissue, disease, or cell type and returning AnnData. Use when pulling reference single-cell RNA-seq data from the largest curated public atlas, running population-scale queries, or benchmarking your data against a reference — for analyzing your own dataset use scanpy or scvi-tools. Part of the AlterLab Academic Skills suite.

Publisher / source
AlterLab-IEU/AlterLab-Academic-Skills (found on the CSV list)
Upstream record
AlterLab-IEU/AlterLab-Academic-Skills
Version
Version 2
Published
Publication review
Approved for publication
Content fingerprint
50ada6c79e96e395f81c1ec43a15931674d1b1c441414a2403cb335b56fa1d76