Data Science & Analytics
scGPT
Embed and annotate single-cell expression data with scGPT, a foundation model for single-cell biology. Use this skill when: (1) Producing cell embeddings from an AnnData for clustering/integration, (2) Zero-shot or fine-tuned cell-type annotation, (3) Gene-level representation for perturbation/GRN tasks. For probabilistic single-cell models (scVI etc.), use the scvi-tools library.
- Publisher / source
- HughYau/AcademicForge (found on GitHub top repositories)
- Upstream record
- HughYau/AcademicForge
- Version
- Version 1
- Published
- Publication review
- Approved for publication
- Content fingerprint
7af27c91d22afd7bd465d2d84b5fbe6702792d9233fa81ab75cbfa00818cf55e