Academic Research Bundle | Prompeteer.ai

Literature review, citation management, methodology design, peer-review workflows, hypothesis testing, and scholarly writing skills for researchers and academics.

Included Skills (75)

  1. Academic Research Assistant — This thirteen-agent pipeline provides rigorous, systematic academic research, literature reviews, and evidence synthesis to support researchers, students, and professionals in complex inquiry.
  2. Academic Pipeline — Academic Pipeline orchestrates the entire research-to-publication process, guiding projects through deep research, drafting, integrity verification, and two‑stage peer review. It ensures each manuscript passes reproducible quality gates before final approval, benefiting scholars who need a reliable, end‑to‑end workflow that guarantees rigorous standards and timely delivery.
  3. Automated Research Agent — Automates scientific research workflows, including hypothesis generation, experiment design, data analysis, and paper writing, benefiting researchers and scientists.
  4. Academic Literature Search — This tool queries eleven scholarly databases to retrieve papers, citations, and full-text documents, providing researchers with verifiable and reproducible academic provenance.
  5. Scientific Web Researcher — This tool enables researchers and developers to perform semantic web searches and extract technical content from URLs using advanced scholarly filtering capabilities.
  6. Academic Research Navigator — This tool helps researchers build strategic search plans and synthesize literature findings into structured guides to accelerate the initial orientation phase of academic projects.
  7. Scientific Hypothesis Generator — This tool helps researchers transform raw observations into transparent, testable scientific hypotheses, rival explanations, and rigorous analysis plans for academic inquiry.
  8. Scholarly Review Assistant — This tool provides qualitative, evidence-based developmental feedback on research works and audits low-stakes assessment rubrics to ensure transparency and methodological rigor.
  9. Scientific Hypothesis Validator — This tool enables researchers and analysts to rigorously test claims by designing, executing, and evaluating comprehensive scientific research protocols with evidence-based confidence levels.
  10. Scientific Ideation Assistant — This skill facilitates evidence-aware research brainstorming by generating, structuring, and critically evaluating candidate scientific directions for early-stage researchers and academic teams.
  11. Academic Paper Reviewer — The Academic Paper Reviewer generates a comprehensive, multi‑perspective critique of a manuscript, simulating five distinct reviewer personas—including a journal‑fit reviewer, three field‑specific peers, and a Devil’s Advocate—to provide balanced feedback. It offers full reviews, rapid assessments, methodology focus, Socratic guidance, and calibration modes, enabling authors, editors, and research teams to refine their work before submission. The tool supports a wide range of trigger phrases in multiple languages, ensuring accessibility for global academic communities.
  12. Statistical Research Assistant — This skill provides researchers with comprehensive statistical analysis, including test selection, assumption verification, power calculations, and professional APA-style reporting for experimental data.
  13. Research Grant Assistant — This tool helps academic researchers draft competitive, agency-compliant funding proposals for major federal institutions by optimizing narrative structure, budget preparation, and strategic impact statements.
  14. Scientific Data Extractor — This tool retrieves structured experimental data from full-text scientific studies to assist researchers in conducting comprehensive literature reviews and evidence synthesis.
  15. Patent Intelligence Analyst — This tool provides specialized prior-art and landscape analysis for inventors and legal professionals by generating comprehensive, structured patent research reports in document format.
  16. Clinical Study Design — Assists clinical teams in designing prospective studies by estimating endpoints, sample sizes, and feasibility, always requiring human oversight.
  17. Web Intelligence Toolkit — This tool provides AI agents with advanced web search, deep research, and data enrichment capabilities to deliver accurate, evidence-based insights for complex inquiries.
  18. LaTeX Poster Generator — This skill assists researchers and academics in designing professional, high-quality conference posters by automating LaTeX layout, formatting, and visual element integration.
  19. Research Orchestration Engine — This intelligent router classifies research requests to delegate to specialist tools or executes a comprehensive fallback search workflow for general inquiries.
  20. Multi-Source Research Assistant — This skill synthesizes real-time discussions from Reddit, Hacker News, and the web to provide researchers with actionable sentiment and trend analysis.
  21. Research Operations Orchestrator — This tool streamlines enterprise research by routing planning, funding, and synthesis tasks across clinical, financial, market, and product workstreams for research teams.
  22. Jupyter Notebook Assistant — Assists data scientists and researchers with interactive data analysis, visualization, and reproducible research using Jupyter notebooks.
  23. Medical Image Segmenter — This tool automates the segmentation of CT and MRI NIfTI volumes for research purposes, providing label-map evidence for medical imaging workflows.
  24. Doc Parser — Doc Parser transforms complex PDFs into clean, machine‑readable data by precisely extracting tables, figures, headers, footers, and multi‑column text, even from academic papers and mixed‑layout documents. The structured outputs are ready for immediate analysis, enabling data analysts to automate extraction from intricate documents. Researchers and content managers benefit from accurate, ready‑to‑use data that streamlines their workflows.
  25. Structured Research Summarizer — This tool transforms dense documents into actionable insights and structured briefs, helping professionals efficiently synthesize information and generate accurate citations.
  26. Paperzilla Research Assistant — This tool enables researchers to interact with Paperzilla data to retrieve project recommendations, summarize canonical academic papers, and manage research feeds efficiently.
  27. Genomic Interval Toolkit — This toolkit provides high-performance Rust and Python utilities for genomic interval operations, sequence analysis, and reference-based data management for bioinformatics researchers.
  28. Neuropixels Analysis Toolkit — This toolkit provides an end-to-end workflow for processing, sorting, and curating high-density Neuropixels neural recordings to assist neuroscientists in electrophysiology data analysis.
  29. NIH Funding Strategist — This tool provides clinical researchers with comprehensive NIH funding analysis, strategic positioning, and actionable submission roadmaps to maximize their grant application success.
  30. Research Operations Assistant — Assists product researchers and PMs with rigorous method selection and insight synthesis for trusted research repositories.
  31. Comprehensive Research Assistant — This tool provides concise, high-quality research briefs for professionals needing quick, actionable insights on complex topics, companies, or trends across multiple credible sources.
  32. Scientific Presentation Builder — This tool assists researchers in crafting visually engaging, structured slide decks for academic conferences, seminars, and thesis defenses using PowerPoint or LaTeX.
  33. Clinical Research Assistant — This tool helps researchers generate and validate governance, cohort, and biomarker documentation for synthetic or aggregate clinical studies while strictly excluding patient-specific care.
  34. AI Content Detector — Detects AI-generated text using rules, LLMs, and optional APIs, assisting with content auditing, academic integrity, and editorial review.
  35. Pacsomatic Workflow Assistant — This toolkit assists bioinformatics researchers by automating input validation, samplesheet generation, and execution management for nf-core/pacsomatic tumor-normal analysis pipelines.
  36. Hypothesis Generation Assistant — This tool assists researchers in planning and auditing automated hypothesis generation workflows using the HypoGeniC framework for labeled text datasets.
  37. Network Analysis Tool — This skill empowers data scientists and researchers to construct, analyze, and visualize complex graph structures using the robust NetworkX library for Python.
  38. Medical Segmentation Assistant — This tool automates VISTA3D segmentation on CT NIfTI volumes to assist medical researchers in generating and recording precise label-map evidence.
  39. RNA-Seq Analysis Assistant — This skill enables bioinformaticians to perform differential gene expression analysis on bulk RNA-seq data using Python-based PyDESeq2 workflows and statistical testing.
  40. Single-Cell Analysis Toolkit — This toolkit provides a comprehensive Python pipeline for single-cell RNA-seq analysis, assisting researchers with quality control, clustering, and visualization of complex biological datasets.
  41. Cancer Imaging Explorer — This tool enables researchers to query and download large-scale public cancer imaging datasets from the NCI Imaging Data Commons for AI development.
  42. Bioinformatics Analysis Toolkit — This toolkit provides comprehensive Python tools for sequence manipulation, phylogenetic analysis, and microbial ecology statistics to assist researchers in processing complex biological datasets.
  43. Pharmacokinetic Modeling Assistant — This tool assists researchers and clinicians in performing pharmacokinetic and pharmacodynamic analysis to optimize drug dosing regimens, efficacy, and patient safety outcomes.
  44. Real-Time Web Search — This skill provides real-time web-search-augmented LLM responses, aiding research assistants, fact-checkers, and anyone needing up-to-date information with cited sources.
  45. Scientific Visualization Assistant — This tool helps researchers create, audit, and format publication-ready scientific figures while ensuring data integrity, accessibility, and compliance with specific journal submission requirements.
  46. Pathway Enrichment Analyzer — This tool performs comprehensive pathway and gene-set enrichment analysis to help researchers interpret biological functions within their gene lists or ranked datasets.
  47. Persistent Knowledge Base — Incrementally build and maintain an interlinked Obsidian vault, creating a persistent personal knowledge base for long-term knowledge accumulation.
  48. Mass Spectrometry Analyzer — This tool provides a comprehensive platform for proteomics and metabolomics workflows, enabling researchers to perform advanced mass spectrometry data analysis and processing.
  49. Research Knowledge Manager — This tool provides a structured governance framework for research teams to organize, tag, and discover insights to prevent duplicate studies.
  50. Synthetic MRI Generator — This tool generates synthetic brain MRI volumes for research purposes, assisting medical imaging developers with rapid prototyping and data simulation workflows.
  51. Deterministic Forecast Builder — This tool assists researchers in constructing single-member weather forecast inference scripts using the Earth2Studio framework for efficient climate modeling and analysis.
  52. Survival Analysis Assistant — This tool helps data scientists build, evaluate, and audit robust survival analysis workflows using the scikit-survival library for right-censored and competing-risk data.
  53. MR Brain Finetuner — This tool enables researchers to finetune the NV-Generate-CTMR diffusion UNet using NIfTI datasets for experimental medical imaging development and analysis.
  54. Molecular Dynamics Simulator — This skill enables researchers to perform and analyze molecular dynamics simulations, facilitating structural biology studies, drug binding characterization, and biophysical protein analysis.
  55. LabArchives API Connector — This tool enables developers to securely interface with LabArchives ELN and Inventory APIs for streamlined data management and automated laboratory research workflows.
  56. Molecular Design Platform — Tamarind provides cloud-based access to advanced open-source molecular design and structural biology tools, enabling researchers to perform complex protein modeling without local GPU requirements.
  57. Phylogenetic Tree Processor — This tool enables bioinformaticians to analyze, manipulate, annotate, and visualize complex phylogenetic trees using the ETE 4 framework for advanced evolutionary research.
  58. Cheminformatics Workflow Assistant — This tool streamlines drug discovery workflows by providing a simplified, Pythonic interface for molecular processing, standardization, and analysis using the RDKit ecosystem.
  59. Mass Spectrometry Processor — This tool enables researchers to import, clean, and compare tandem mass spectra, facilitating efficient library matching and spectral similarity analysis for metabolomics workflows.
  60. RNA-Seq Analysis Orchestrator — This skill automates end-to-end bulk RNA-seq analysis, guiding researchers from raw FASTQ files through differential expression, pathway enrichment, and publication-ready visualization.
  61. Clinical Deep-Learning Toolkit — This skill assists researchers and developers in building modular healthcare machine learning pipelines for EHR, signal, and imaging data analysis.
  62. Zotero Library Manager — This skill enables researchers and developers to programmatically manage Zotero bibliographic libraries, automating the retrieval, creation, and organization of references and attachments.
  63. Mermaid Diagram Generator — This skill enables users to create professional scientific documentation by embedding standardized, version-controlled Mermaid diagrams directly into Markdown files for seamless technical visualization.
  64. WSI Processing Toolkit — This library automates tissue detection, tile extraction, and stain normalization for digital pathologists preparing whole-slide image datasets for deep learning pipelines.
  65. Adaptyv Bio Assistant — This skill assists researchers in designing protein experiments, submitting sequences, and retrieving experimental data using the Adaptyv Bio Foundry API and Python SDK.
  66. Statistical Power Planner — This tool performs rigorous power analyses and sample size calculations to help researchers design robust studies and justify subject requirements for grant proposals.
  67. Bioinformatics Data Integrator — This tool provides a unified Python interface for researchers to query and integrate data from over forty bioinformatics databases through a consistent API.
  68. Matplotlib Visualization Expert — This skill provides comprehensive guidance on creating highly customized, publication-quality static and interactive plots for data scientists and researchers using Python.
  69. Scientific Poster Generator — This tool creates and audits professional, editable scientific posters in PowerPoint format for researchers requiring strict adherence to physical, accessibility, and security standards.
  70. GeoPandas Workflow Assistant — This tool provides expert guidance and local audit capabilities for developers building robust, reproducible geospatial data workflows using the GeoPandas library.
  71. Genomic Data Processor — This tool enables bioinformaticians to efficiently read, query, and manipulate high-throughput sequencing files like SAM, BAM, VCF, and FASTA using the pysam library.
  72. Opentrons Protocol Assistant — This skill assists laboratory researchers and automation engineers in authoring, simulating, and troubleshooting Python Protocol API v2 scripts for Opentrons robotic platforms.
  73. Bioinformatics Query Tool — This tool provides researchers with unified command-line and Python access to over twenty genomic databases for rapid sequence analysis and data retrieval.
  74. Climate Data Fetcher — This tool assists researchers in retrieving specific weather and climate datasets by generating accurate Earth2Studio scripts for seamless data integration.
  75. Synthetic CT Generator — This tool generates synthetic CT volumes and masks for medical imaging researchers using the NV-Generate-CTMR rflow-ct framework for rapid prototyping.